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nf-configs/docs/pipeline/ampliseq/uppmax.md
Daniel Lundin c8de9be701 Adding UPPMAX specific config for ampliseq
2020-03-31 15:17:24 +02:00

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nf-core/configs: uppmax ampliseq specific configuration

Extra specific configuration for the ampliseq pipeline.

Usage

To use, run the pipeline with -profile uppmax.

This will download and launch the ampliseq specific uppmax.config which has been pre-configured with a setup suitable for the UPPMAX cluster.

Example: nextflow run nf-core/ampliseq -profile uppmax

ampliseq specific configurations for uppmax

Specific configurations for UPPMAX has been made for ampliseq.

  • Makes sure that a fat node is allocated for training and applying a Bayesian classifier.