mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-11-14 21:53:09 +00:00
22 lines
806 B
Markdown
22 lines
806 B
Markdown
# nf-core/configs: MUNIN sarek specific configuration
|
|
|
|
Extra specific configuration for sarek pipeline
|
|
|
|
## Usage
|
|
|
|
To use, run the pipeline with `-profile munin`.
|
|
|
|
This will download and launch the sarek specific [`munin.config`](../conf/pipeline/sarek/munin.config) which has been pre-configured with a setup suitable for the MUNIN cluster.
|
|
|
|
Example: `nextflow run nf-core/sarek -profile munin`
|
|
|
|
## Sarek specific configurations for MUNIN
|
|
|
|
Specific configurations for MUNIN has been made for sarek.
|
|
|
|
* Params `annotation_cache` set to `true`
|
|
* Path to `snpEff_cache`: `/data1/cache/snpEff/`
|
|
* Path to `vep_cache`: `/data1/cache/VEP/`
|
|
* Path to `pon`: `/data1/PON/vcfs/BTB.PON.vcf.gz`
|
|
* Path to `pon_index`: `/data1/PON/vcfs/BTB.PON.vcf.gz.tbi`
|
|
* Load module `Sentieon` for Processes with `sentieon` labels
|