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19 lines
No EOL
704 B
Text
19 lines
No EOL
704 B
Text
process {
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withName:'PICARD_MARKDUPLICATES' {
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memory = { check_max( 90.GB * task.attempt, 'memory' ) }
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}
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withName:'DEEPVARIANT' {
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cpus = { check_max( 16 * task.attempt, 'cpus' ) }
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memory = { check_max( 80.GB * task.attempt, 'memory' ) }
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}
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// Java memory fixes
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withName:'QUALIMAP_BAMQC' {
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clusterOptions = { "-A $params.priority ${params.clusterOptions ?: ''} ${task.memory ? "--mem ${task.memory.mega * 1.15 as long}M" : ''}" }
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}
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withName:'PICARD_MARKDUPLICATES' {
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clusterOptions = { "-A $params.priority ${params.clusterOptions ?: ''} ${task.memory ? "--mem ${task.memory.mega * 1.15 as long}M" : ''}" }
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}
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} |