nf-configs/conf/pipeline/raredisease/hasta.config

process {
    
    withName:'PICARD_MARKDUPLICATES' {
        memory = { check_max( 90.GB  * task.attempt, 'memory' ) }
    }
    withName:'DEEPVARIANT' {
        cpus   = { check_max( 16      * task.attempt, 'cpus' ) }
        memory = { check_max( 80.GB   * task.attempt, 'memory' ) }
    }

    // Java memory fixes
    withName:'QUALIMAP_BAMQC' {
        clusterOptions = { "-A $params.priority ${params.clusterOptions ?: ''} ${task.memory ? "--mem ${task.memory.mega * 1.15 as long}M" : ''}" }
    }
    withName:'PICARD_MARKDUPLICATES' {
        clusterOptions = { "-A $params.priority ${params.clusterOptions ?: ''} ${task.memory ? "--mem ${task.memory.mega * 1.15 as long}M" : ''}" }
    }
    
}