millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-09-21 14:02:05 +00:00
Code Issues Releases Packages Activity
nf-configs/docs/pipeline/scflow/imperial.md
Edmund Miller 6c37bf3b20
style: Run prettier
2022-03-21 19:23:28 -05:00

860 B
Raw Blame History

nf-core/configs: Imperial scflow Specific Configuration

Extra specific configuration for the scflow pipeline

Usage

To use, run the pipeline with -profile imperial or -profile imperial_mb.

This will download and launch the scflow specific imperial.config which has been pre-configured with a setup suitable for the Imperial HPC cluster.

Example: nextflow run nf-core/scflow -profile imperial

scflow specific configurations for Imperial

Specific configurations for Imperial have been made for scflow.

  • Singularity enabled and autoMounts set to true
  • Singularity cacheDir path set to an RDS location
  • Singularity runOptions path set to bind (-B) RDS paths with container paths.
  • Params ctd_folder set to an RDS location.
  • Parms ensembl_mappings set to an RDS location.