mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-11-14 21:53:09 +00:00
19 lines
747 B
Markdown
19 lines
747 B
Markdown
# nf-core/configs: HASTA rnafusion specific configuration
|
|
|
|
Extra specific configuration for rnafusion pipeline
|
|
|
|
## Usage
|
|
|
|
To use, run the pipeline with `-profile hasta`.
|
|
|
|
This will download and launch the rnafusion specific [`hasta.config`](../../../conf/pipeline/rnafusion/munin.config) which has been pre-configured with a setup suitable for the `HASTA` cluster.
|
|
|
|
Example: `nextflow run nf-core/rnafusion -profile hasta`
|
|
|
|
## rnafusion specific configurations for HASTA
|
|
|
|
Specific configurations for `HASTA` has been made for rnafusion.
|
|
|
|
- Always run all the analysis steps (all = true)
|
|
- Use trimming (trim = true)
|
|
- Take the fusions identified by at least 2 fusion detection tools to the fusioninspector analysis (fusioninspector_filter = true)
|