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nf-configs/docs/pipeline/mag/eva.md
James A. Fellows Yates 97d57539e3
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Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>
2022-06-03 12:51:20 +02:00

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# nf-core/configs: eva mag specific configuration
Extra specific configuration for mag pipeline
## Usage
To use, run the pipeline with `-profile eva`.
This will download and launch the mag specific [`eva.config`](../../../conf/pipeline/mag/eva.config) which has been pre-configured with a setup suitable for the MPI-EVA cluster.
Example: `nextflow run nf-core/mag -profile eva`
## mag specific configurations for eva
Specific configurations for eva has been made for mag, primarily adjusting SGE memory requirements of Java tools (e.g. FastQC).