mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-11-11 04:23:10 +00:00
30 lines
1.3 KiB
Markdown
30 lines
1.3 KiB
Markdown
# nf-core/configs maestro eager specific configuration
|
|
|
|
Extra specific configuration for eager pipeline for human DNA data processing
|
|
|
|
## Usage
|
|
|
|
To use, run the pipeline with `-profile maestro,<qos>,<type>`, where qos can be normal or long and type can be nuclear or mitochondrial
|
|
|
|
This will download and launch the eager specific [`maestro.config`](../../../conf/pipeline/eager/maestro.config) which has been pre-configured with a setup suitable for the Maestro cluster.
|
|
|
|
Example: `nextflow run nf-core/eager -profile maestro,normal,nuclear`
|
|
|
|
## eager specific configurations for maestro
|
|
|
|
Specific configurations for maestro has been made for eager.
|
|
|
|
We decided not to provide any tool parameters here, and focus the profile only for resource management: Maestro profiles runs with default nf-core/eager parameters, but with modifications concerning time (limit to 24h in normal qos, so increasing the memory and CPUs, specially for alignments).
|
|
|
|
## nuclear
|
|
|
|
Increases the number of CPUs and the amount of memory for key processes
|
|
|
|
## mitochondrial
|
|
|
|
More limited computational resources
|
|
|
|
## unlimitedtime
|
|
|
|
Every process has one year time limit. To be used only when some processes can not be completed for time reasons when using mitochondrial or nuclear profiles.
|
|
Expect slow processes when using this profile because only 5 CPUs are available at a time.
|