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nf-configs/conf/sahmri.config
2022-03-12 21:17:33 +10:30

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params {
config_profile_description = 'South Australian Medial Health and Research Institute (SAHMRI) HPC cluster profile.'
config_profile_contact = 'Nathan Watson-Haigh (nathan.watson-haigh@sahmri.com)'
config_profile_url = "https://sahmri.com"
max_memory = 375.GB
max_cpus = 32
max_time = 14.d
igenomes_base = '/cancer/storage/shared/igenomes/'
}
process {
executor = 'slurm'
queue = 'sahmri_prod_hpc,sahmri_cancer_hpc'
maxRetries = 2
cpus = { check_max( 2 * task.attempt, 'cpus') }
memory = { check_max( 1.GB * task.attempt, 'memory') }
time = { check_max( 10.m * task.attempt, 'time') }
}
executor {
queueSize = 50
submitRateLimit = '10 sec'
}
singularity {
enabled = true
autoMounts = true
cacheDir = '/cancer/storage/shared/simg'
}
cleanup = true