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16 lines
1.2 KiB
Markdown
16 lines
1.2 KiB
Markdown
# nf-core/configs: Hasta Configuration
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## Using the Hasta config profile
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Before running the pipeline `Nextflow` will need to be install in the conda environment being used.
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To use, run the pipeline with `-profile hasta` (one hyphen).
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This will download and launch the [`hasta.config`](../conf/hasta.config) which has been pre-configured with a setup suitable for the hasta servers.
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It will enable `Nextflow` to manage the pipeline jobs via the `Slurm` job scheduler.
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Using this profile, `Docker` image(s) containing required software(s) will be downloaded, and converted to `Singularity` image(s) if needed before execution of the pipeline.
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Recent version of `Nextflow` also support the environment variable `NXF_SINGULARITY_CACHEDIR` which can be used to supply images. A use case: `NXF_SINGULARITY_CACHEDIR=/path/to/images; export NXF_SINGULARITY_CACHEDIR` before running the pipeline.
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## Development and production config
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Each user on hasta has a priority based on their allocated team, either development or production. To enable this when submitting a job to Slurm, submit with `-profile hasta,dev_prio` or `-profile hasta,prod_prio`. This overwrites certain parts of the config and submits the job based on different priorities.
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