nf-configs/docs/pipeline/rnaseq/sbc_sharc.md

nf-core/configs: RNA-Seq Specific Configuration - Sheffield Bioinformatics Core Facility ShARC

Specific configuration for nf-co.re/rnaseq pipeline

Usage

To use, run nextflow with the pipeline using -profile sbc_sharc (note the single hyphen).

This will download and launch the rnaseq specific sbc_sharc.config which has been pre-configured with a setup suitable for the University of Sheffield ShARC cluster and will automatically load the appropriate pipeline-specific configuration file.

Example: nextflow run nf-core/rnaseq -profile sbc_sharc