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19 lines
747 B
Markdown
19 lines
747 B
Markdown
# nf-core/configs: HASTA rnafusion specific configuration
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Extra specific configuration for rnafusion pipeline
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## Usage
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To use, run the pipeline with `-profile hasta`.
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This will download and launch the rnafusion specific [`hasta.config`](../../../conf/pipeline/rnafusion/munin.config) which has been pre-configured with a setup suitable for the `HASTA` cluster.
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Example: `nextflow run nf-core/rnafusion -profile hasta`
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## rnafusion specific configurations for HASTA
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Specific configurations for `HASTA` has been made for rnafusion.
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- Always run all the analysis steps (all = true)
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- Use trimming (trim = true)
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- Take the fusions identified by at least 2 fusion detection tools to the fusioninspector analysis (fusioninspector_filter = true)
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