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18 lines
604 B
Markdown
18 lines
604 B
Markdown
# nf-core/configs: uppmax sarek specific configuration
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Extra specific configuration for sarek pipeline
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## Usage
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To use, run the pipeline with `-profile uppmax`.
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This will download and launch the sarek specific [`uppmax.config`](../conf/pipeline/sarek/uppmax.config) which has been pre-configured with a setup suitable for uppmax clusters.
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Example: `nextflow run nf-core/sarek -profile uppmax`
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## Sarek specific configurations for uppmax clusters
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Specific configurations for uppmax clusters has been made for sarek.
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* Set paths to reference genomes
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* Set path to singularity containers for `irma`
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