millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-28 10:29:56 +00:00
Code Issues Releases Packages Activity
nf-configs/docs/pipeline/sarek/crukmi.md
SPearce a142ad7eae Added link to Sarek specific documentation
2022-09-01 13:55:08 +01:00

637 B
Raw Blame History

nf-core/configs: CRUK-MI sarek specific configuration

Extra specific configuration for sarek pipeline

Usage

To use, run the pipeline with -profile crukmi.

This will download and launch the sarek specific crukmi.config which has been pre-configured with a setup suitable for the Cancer Research UK Manchester Institute cluster (phoenix).

Example: nextflow run nf-core/sarek -profile crukmi

Sarek specific configurations for CRUK-MI

Specific configurations for CRUK-MI has been made for sarek.

  • Initial requested resources for SAMTOOLS_MPILEUP are only 5GB and 1 core.