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22 lines
806 B
Markdown
22 lines
806 B
Markdown
# nf-core/configs: MUNIN sarek specific configuration
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Extra specific configuration for sarek pipeline
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## Usage
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To use, run the pipeline with `-profile munin`.
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This will download and launch the sarek specific [`munin.config`](../conf/pipeline/sarek/munin.config) which has been pre-configured with a setup suitable for the MUNIN cluster.
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Example: `nextflow run nf-core/sarek -profile munin`
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## Sarek specific configurations for MUNIN
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Specific configurations for MUNIN has been made for sarek.
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* Params `annotation_cache` set to `true`
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* Path to `snpEff_cache`: `/data1/cache/snpEff/`
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* Path to `vep_cache`: `/data1/cache/VEP/`
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* Path to `pon`: `/data1/PON/vcfs/BTB.PON.vcf.gz`
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* Path to `pon_index`: `/data1/PON/vcfs/BTB.PON.vcf.gz.tbi`
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* Load module `Sentieon` for Processes with `sentieon` labels
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