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nf-configs/docs/pipeline/sarek/munin.md
Maxime Garcia f6c2e4c65f Update docs/pipeline/sarek/munin.md 
Update conf/pipeline/sarek/munin.config

testing out module and containers collision
2019-11-26 11:57:51 +01:00

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nf-core/configs: MUNIN sarek specific configuration

Extra specific configuration for sarek pipeline

Usage

To use, run the pipeline with -profile munin.

This will download and launch the sarek specific munin.config which has been pre-configured with a setup suitable for the MUNIN cluster.

Example: nextflow run nf-core/sarek -profile munin

Sarek specific configurations for MUNIN

Specific configurations for MUNIN has been made for sarek.

  • Params annotation_cache set to true
  • Path to snpEff_cache: /data1/cache/snpEff/
  • Path to vep_cache: /data1/cache/VEP/
  • Path to pon: /data1/PON/vcfs/BTB.PON.vcf.gz
  • Path to pon_index: /data1/PON/vcfs/BTB.PON.vcf.gz.tbi
  • Load module Sentieon for Processes with sentieon labels