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1.1 KiB
1.1 KiB
nf-core/configs: MUNIN sarek specific configuration
Extra specific configuration for sarek pipeline
Usage
To use, run the pipeline with -profile munin
.
This will download and launch the sarek specific munin.config
which has been pre-configured with a setup suitable for the MUNIN
cluster.
Example: nextflow run nf-core/sarek -profile munin
Sarek specific configurations for MUNIN
Specific configurations for MUNIN
has been made for sarek.
- Params
annotation_cache
andcadd_cache
set totrue
- Params
vep_cache_version
set to95
- Path to
snpeff_cache
:/data1/cache/snpEff/
- Path to
vep_cache
:/data1/cache/VEP/
- Path to
pon
:/data1/PON/vcfs/BTB.PON.vcf.gz
- Path to
pon_index
:/data1/PON/vcfs/BTB.PON.vcf.gz.tbi
- Path to
cadd_indels
:/data1/cache/CADD/v1.4/InDels.tsv.gz
- Path to
cadd_indels_tbi
:/data1/cache/CADD/v1.4/InDels.tsv.gz.tbi
- Path to
cadd_wg_snvs
:/data1/cache/CADD/v1.4/whole_genome_SNVs.tsv.gz
- Path to
cadd_wg_snvs_tbi
:/data1/cache/CADD/v1.4/whole_genome_SNVs.tsv.gz.tbi
- Load module
Sentieon
for Processes withsentieon
labels