mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 21:53:10 +00:00
48 lines
1.2 KiB
YAML
48 lines
1.2 KiB
YAML
|
name: medaka
|
||
|
|
description: A tool to create consensus sequences and variant calls from nanopore sequencing data
|
||
|
|
keywords:
|
||
|
|
- assembly
|
||
|
|
- polishing
|
||
|
|
- nanopore
|
||
|
|
tools:
|
||
|
|
- medaka:
|
||
|
|
description: Neural network sequence error correction.
|
||
|
|
homepage: https://nanoporetech.github.io/medaka/index.html
|
||
|
|
documentation: https://nanoporetech.github.io/medaka/index.html
|
||
|
|
tool_dev_url: https://github.com/nanoporetech/medaka
|
||
|
|
doi: ""
|
||
|
|
licence: ['Mozilla Public License 2.0']
|
||
|
|
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- reads:
|
||
|
|
type: file
|
||
|
|
description: List of input nanopore fasta/FastQ files
|
||
|
|
pattern: "*.{fasta,fa,fastq,fastq.gz,fq,fq.gz}"
|
||
|
|
- assembly:
|
||
|
|
type: file
|
||
|
|
description: Genome assembly
|
||
|
|
pattern: "*.{fasta,fa}"
|
||
|
|
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- versions:
|
||
|
|
type: file
|
||
|
|
description: File containing software versions
|
||
|
|
pattern: "versions.yml"
|
||
|
|
- assembly:
|
||
|
|
type: file
|
||
|
|
description: Polished genome assembly
|
||
|
|
pattern: "*.fa.gz"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@avantonder"
|