nf-core_modules/modules/samtools/faidx/meta.yml

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name: samtools_faidx
description: Index FASTA file
keywords:
- index
- fasta
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tools:
- samtools:
description: |
SAMtools is a set of utilities for interacting with and post-processing
short DNA sequence read alignments in the SAM, BAM and CRAM formats, written by Heng Li.
These files are generated as output by short read aligners like BWA.
homepage: http://www.htslib.org/
documentation: http://www.htslib.org/doc/samtools.html
doi: 10.1093/bioinformatics/btp352
licence: ["MIT"]
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input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- fasta:
type: file
description: FASTA file
pattern: "*.{fa,fasta}"
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output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- fai:
type: file
description: FASTA index file
pattern: "*.{fai}"
- gzi:
type: file
description: Optional gzip index file for compressed inputs
pattern: "*.gzi"
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
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authors:
- "@drpatelh"
- "@ewels"
- "@phue"