nf-core_modules/tests/software/bcftools/mpileup/main.nf

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#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { BCFTOOLS_MPILEUP } from '../../../../software/bcftools/mpileup/main.nf' addParams( options: ['args2': '--no-version --ploidy 1 --multiallelic-caller',
'args3': '--no-version' ] )
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workflow test_bcftools_mpileup {
input = [ [ id:'test' ], // meta map
[ file("${launchDir}/tests/data/genomics/sarscov2/illumina/bam/test_paired_end.sorted.bam", checkIfExists: true) ]]
fasta = [ file("${launchDir}/tests/data/genomics/sarscov2/genome/genome.fasta", checkIfExists: true) ]
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BCFTOOLS_MPILEUP ( input, fasta )
}