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50 lines
1.3 KiB
YAML
50 lines
1.3 KiB
YAML
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name: graphmap2_align
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description: A versatile pairwise aligner for genomic and spliced nucleotide sequences
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keywords:
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- align
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- fasta
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- fastq
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- genome
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- reference
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tools:
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- graphmap2:
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description: |
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A versatile pairwise aligner for genomic and spliced nucleotide sequences.
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homepage: https://github.com/lh3/minimap2
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documentation: https://github.com/lh3/minimap2#uguide
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- fastq:
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type: file
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description: |
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List of input FASTQ files
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and paired-end data, respectively.
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- fasta:
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type: file
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description: |
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Reference database in FASTA format.
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- index:
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type: file
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description: |
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FASTA index in gmidx.
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- sam:
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type: file
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description: Alignment in SAM format
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pattern: "*.sam"
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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authors:
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- "@yuukiiwa"
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