mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 05:43:08 +00:00
a8720463ac
* add graphmap index module * add graphmap2/index * add graohmap2 align module * remove graphmap2 align md5sum
49 lines
1.3 KiB
YAML
49 lines
1.3 KiB
YAML
name: graphmap2_align
|
|
description: A versatile pairwise aligner for genomic and spliced nucleotide sequences
|
|
keywords:
|
|
- align
|
|
- fasta
|
|
- fastq
|
|
- genome
|
|
- reference
|
|
tools:
|
|
- graphmap2:
|
|
description: |
|
|
A versatile pairwise aligner for genomic and spliced nucleotide sequences.
|
|
homepage: https://github.com/lh3/minimap2
|
|
documentation: https://github.com/lh3/minimap2#uguide
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- fastq:
|
|
type: file
|
|
description: |
|
|
List of input FASTQ files
|
|
and paired-end data, respectively.
|
|
- fasta:
|
|
type: file
|
|
description: |
|
|
Reference database in FASTA format.
|
|
- index:
|
|
type: file
|
|
description: |
|
|
FASTA index in gmidx.
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- sam:
|
|
type: file
|
|
description: Alignment in SAM format
|
|
pattern: "*.sam"
|
|
- version:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "*.{version.txt}"
|
|
authors:
|
|
- "@yuukiiwa"
|