nf-core_modules/modules/bedtools/complement/meta.yml

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name: bedtools_complement
description: Returns all intervals in a genome that are not covered by at least one interval in the input BED/GFF/VCF file.
keywords:
- bed
- complement
tools:
- bedtools:
description: |
A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types.
documentation: https://bedtools.readthedocs.io/en/latest/content/tools/complement.html
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
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- bed:
type: file
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description: Input BED file
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pattern: "*.{bed}"
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- sizes:
type: file
description: File which defines the chromosome lengths for a given genome
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pattern: "*.{sizes}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- bed:
type: file
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description: Bed file with all genomic intervals that are not covered by at least one record from the input file.
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pattern: "*.{bed}"
- version:
type: file
description: File containing software version
pattern: "*.{version.txt}"
authors:
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- "@Emiller88"
- "@sruthipsuresh"
- "@drpatelh"