nf-core_modules/modules/fgbio/callmolecularconsensusreads/meta.yml

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name: fgbio_callmolecularconsensusreads
description: Calls consensus sequences from reads with the same unique molecular tag.
keywords:
- UMIs
- consensus sequence
- bam
- sam
tools:
- fgbio:
description: Tools for working with genomic and high throughput sequencing data.
homepage: https://github.com/fulcrumgenomics/fgbio
documentation: http://fulcrumgenomics.github.io/fgbio/
licence: ['MIT']
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false, collapse:false ]
- bam:
type: file
description: |
The input SAM or BAM file.
pattern: "*.{bam,sam}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- bam:
type: file
description: |
Output SAM or BAM file to write consensus reads.
pattern: "*.{bam,sam}"
- version:
type: file
description: File containing software version
pattern: "*.{version.txt}"
authors:
- "@sruthipsuresh"