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* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
45 lines
1.2 KiB
YAML
45 lines
1.2 KiB
YAML
name: fgbio_callmolecularconsensusreads
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description: Calls consensus sequences from reads with the same unique molecular tag.
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keywords:
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- UMIs
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- consensus sequence
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- bam
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- sam
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tools:
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- fgbio:
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description: Tools for working with genomic and high throughput sequencing data.
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homepage: https://github.com/fulcrumgenomics/fgbio
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documentation: http://fulcrumgenomics.github.io/fgbio/
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licence: ['MIT']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false, collapse:false ]
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- bam:
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type: file
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description: |
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The input SAM or BAM file.
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pattern: "*.{bam,sam}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- bam:
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type: file
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description: |
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Output SAM or BAM file to write consensus reads.
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pattern: "*.{bam,sam}"
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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authors:
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- "@sruthipsuresh"
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