mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 05:43:08 +00:00
41 lines
1 KiB
YAML
41 lines
1 KiB
YAML
|
name: last_dotplot
|
||
|
|
description: Makes a dotplot (Oxford Grid) of pair-wise sequence alignments
|
||
|
|
keywords:
|
||
|
|
- LAST
|
||
|
|
- plot
|
||
|
|
- pair
|
||
|
|
- alignment
|
||
|
|
- MAF
|
||
|
|
tools:
|
||
|
|
- last:
|
||
|
|
description: LAST finds & aligns related regions of sequences.
|
||
|
|
homepage: https://gitlab.com/mcfrith/last
|
||
|
|
documentation: https://gitlab.com/mcfrith/last/-/blob/main/doc/last-dotplot.rst
|
||
|
|
tool_dev_url: https://gitlab.com/mcfrith/last
|
||
|
|
doi: ""
|
||
|
|
licence: ['GPL-3.0-or-later']
|
||
|
|
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- maf:
|
||
|
|
type: file
|
||
|
|
description: Multiple Aligment Format (MAF) file, compressed with gzip
|
||
|
|
pattern: "*.{maf.gz}"
|
||
|
|
|
||
|
|
output:
|
||
|
|
- plot:
|
||
|
|
type: file
|
||
|
|
description: Pairwise alignment dot plot image, in PNG or other format.
|
||
|
|
pattern: "*.{gif,png}"
|
||
|
|
- version:
|
||
|
|
type: file
|
||
|
|
description: File containing software version
|
||
|
|
pattern: "*.{version.txt}"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@charles-plessy"
|