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nf-core_modules/tests/modules/entrezdirect/xtract/test.yml

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new (fixed) module: entrezdirect/xtract (#1926) * first commit: module files * last version main.nf * modules/entrezdirect/xtract/meta.yml * updated file * updated test * Update modules/entrezdirect/xtract/main.nf changed name of output file Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update modules/entrezdirect/xtract/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update tests/modules/entrezdirect/xtract/main.nf Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk> * Update tests/modules/entrezdirect/xtract/main.nf Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk> * updated test, removed esummary input file Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk>
2022-07-26 14:58:49 +00:00
- name: entrezdirect xtract test_entrezdirect_xtract_assembly
command: nextflow run ./tests/modules/entrezdirect/xtract -entry test_entrezdirect_xtract_assembly -c ./tests/config/nextflow.config -c ./tests/modules/entrezdirect/xtract/nextflow.config
tags:
- entrezdirect
Set process label to `process_single` for modules with no `task.cpus` usage (#2076) * Set process label to `process_single` for modules with no `task.cpus` usage * Fix tests of 'borked' modules * prettier * More modules are single-threaded and can use process_single * Adding process_single to hmmer/esl* modules * Fix failing tests * Prettier Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk> Co-authored-by: Daniel Lundin <erik.rikard.daniel@gmail.com>
2022-09-19 09:54:47 +00:00
- entrezdirect/xtract
new (fixed) module: entrezdirect/xtract (#1926) * first commit: module files * last version main.nf * modules/entrezdirect/xtract/meta.yml * updated file * updated test * Update modules/entrezdirect/xtract/main.nf changed name of output file Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update modules/entrezdirect/xtract/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update tests/modules/entrezdirect/xtract/main.nf Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk> * Update tests/modules/entrezdirect/xtract/main.nf Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk> * updated test, removed esummary input file Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk>
2022-07-26 14:58:49 +00:00
files:
Set process label to `process_single` for modules with no `task.cpus` usage (#2076) * Set process label to `process_single` for modules with no `task.cpus` usage * Fix tests of 'borked' modules * prettier * More modules are single-threaded and can use process_single * Adding process_single to hmmer/esl* modules * Fix failing tests * Prettier Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk> Co-authored-by: Daniel Lundin <erik.rikard.daniel@gmail.com>
2022-09-19 09:54:47 +00:00
- path: output/entrezdirect/test_assembly.txt
md5sum: 17073db7c14890aef30f5e3f2d003d32
new (fixed) module: entrezdirect/xtract (#1926) * first commit: module files * last version main.nf * modules/entrezdirect/xtract/meta.yml * updated file * updated test * Update modules/entrezdirect/xtract/main.nf changed name of output file Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update modules/entrezdirect/xtract/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update tests/modules/entrezdirect/xtract/main.nf Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk> * Update tests/modules/entrezdirect/xtract/main.nf Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk> * updated test, removed esummary input file Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk>
2022-07-26 14:58:49 +00:00
- name: entrezdirect xtract test_entrezdirect_xtract_genome
command: nextflow run ./tests/modules/entrezdirect/xtract -entry test_entrezdirect_xtract_genome -c ./tests/config/nextflow.config -c ./tests/modules/entrezdirect/xtract/nextflow.config
tags:
- entrezdirect
Set process label to `process_single` for modules with no `task.cpus` usage (#2076) * Set process label to `process_single` for modules with no `task.cpus` usage * Fix tests of 'borked' modules * prettier * More modules are single-threaded and can use process_single * Adding process_single to hmmer/esl* modules * Fix failing tests * Prettier Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk> Co-authored-by: Daniel Lundin <erik.rikard.daniel@gmail.com>
2022-09-19 09:54:47 +00:00
- entrezdirect/xtract
new (fixed) module: entrezdirect/xtract (#1926) * first commit: module files * last version main.nf * modules/entrezdirect/xtract/meta.yml * updated file * updated test * Update modules/entrezdirect/xtract/main.nf changed name of output file Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update modules/entrezdirect/xtract/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update tests/modules/entrezdirect/xtract/main.nf Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk> * Update tests/modules/entrezdirect/xtract/main.nf Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk> * updated test, removed esummary input file Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk>
2022-07-26 14:58:49 +00:00
files:
Set process label to `process_single` for modules with no `task.cpus` usage (#2076) * Set process label to `process_single` for modules with no `task.cpus` usage * Fix tests of 'borked' modules * prettier * More modules are single-threaded and can use process_single * Adding process_single to hmmer/esl* modules * Fix failing tests * Prettier Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk> Co-authored-by: Daniel Lundin <erik.rikard.daniel@gmail.com>
2022-09-19 09:54:47 +00:00
- path: output/entrezdirect/test_genome.txt
md5sum: 931279db7c80c5bb9ed523815898a9cd
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