nf-core_modules/tools/fastq_screen/meta.yml

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name: FastQ Screen
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description: Run FastQ Screen on sequenced reads for Species Identification
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keywords:
- Quality Control
- Species Screen
- Contamination
tools:
- fastqc:
description: |
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FastQ Screen allows you to screen a library of sequences in
FastQ format against a set of sequence databases so you can
see if the composition of the library matches with what you expect.
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homepage: https://www.bioinformatics.babraham.ac.uk/projects/fastq_screen/
documentation: https://www.bioinformatics.babraham.ac.uk/projects/fastq_screen/_build/html/index.html
input:
-
- sample_id:
type: string
description: Sample identifier
- reads:
type: file
description: Input FastQ file
output:
-
- report:
type: file
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description: FastQ Screen report
pattern: *_screen.{txt,html,png}
optional_pattern: *_screen.bisulfite_orientation.png
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authors:
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- @FelixKrueger