nf-core_modules/modules/seqtk/seq/meta.yml

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name: seqtk_seq
description: Common transformation operations on FASTA or FASTQ files.
keywords:
- seq
tools:
- seqtk:
description: Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. The seqtk seq command enables common transformation operations on FASTA or FASTQ files.
homepage: https://github.com/lh3/seqtk
documentation: https://docs.csc.fi/apps/seqtk/
tool_dev_url: https://github.com/lh3/seqtk
licence: ['MIT']
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test' ]
- sequences:
type: file
description: A FASTQ or FASTA file
pattern: "*.{fastq.gz, fastq, fq, fq.gz, fasta, fastq.gz, fa, fa.gz, fas, fas.gz, fna, fna.gz}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test' ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- sequences:
type: file
description: FASTQ/FASTA file containing renamed sequences
pattern: "*.{fastq.gz, fasta.gz}"
authors:
- "@hseabolt"
- "@mjcipriano"
- "@sateeshperi"