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1016c9bd1a
* Initial commit of seqtk/seq module files * pytest.yml * updated module and tests code, need to finish modules/main.nf * Initial commit of seqtk/seq module files * pytest.yml * updated module and tests code, need to finish modules/main.nf * Adding code and configs for seqtk/seq module * Re-tested module following minor code update * removed trailing whitespace errors * Changed variable name to following reviewer suggestions Co-authored-by: Sateesh <33637490+sateeshperi@users.noreply.github.com>
42 lines
1.2 KiB
YAML
42 lines
1.2 KiB
YAML
name: seqtk_seq
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description: Common transformation operations on FASTA or FASTQ files.
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keywords:
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- seq
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tools:
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- seqtk:
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description: Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. The seqtk seq command enables common transformation operations on FASTA or FASTQ files.
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homepage: https://github.com/lh3/seqtk
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documentation: https://docs.csc.fi/apps/seqtk/
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tool_dev_url: https://github.com/lh3/seqtk
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licence: ['MIT']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test' ]
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- sequences:
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type: file
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description: A FASTQ or FASTA file
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pattern: "*.{fastq.gz, fastq, fq, fq.gz, fasta, fastq.gz, fa, fa.gz, fas, fas.gz, fna, fna.gz}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test' ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- sequences:
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type: file
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description: FASTQ/FASTA file containing renamed sequences
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pattern: "*.{fastq.gz, fasta.gz}"
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authors:
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- "@hseabolt"
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- "@mjcipriano"
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- "@sateeshperi"
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