nf-core_modules/software/bedtools/complement/meta.yml

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name: bedtools complement
description: Returns all intervals in a genome that are not covered by at least one interval in the input BED/GFF/VCF file
keywords:
- complement
tools:
- bedtools:
description: |
Bedtools is a software package that provides with a toolset to perform genome arithmetic operations.
homepage: https://bedtools.readthedocs.io/en/latest/index.html
documentation: https://bedtools.readthedocs.io/en/latest/index.html
doi: 10.093/bioinformatics/btq033
input:
-
- input_file:
type: file
description: Input genomic coordinates file
pattern: "*.{bed,gff,vcf}"
- fasta_sizes:
type: file
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description: Genome chromosome sizes
pattern: "*.{txt,sizes}"
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output:
-
- index:
type: stdout,file
description:
pattern: "stdout,*.{bed,gff,vcf}"
authors:
- "@JoseEspinosa"