nf-core_modules/tests/software/picard/markduplicates/main.nf

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#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
2021-02-03 16:20:02 +00:00
include { PICARD_MARKDUPLICATES } from '../../../../software/picard/markduplicates/main.nf' addParams( options: [:] )
workflow test_picard_markduplicates_sorted_bam {
def input = []
input = [ [ id:'test', single_end:false ], // meta map
file("${launchDir}/tests/data/bam/test.paired_end.sorted.bam", checkIfExists: true) ]
PICARD_MARKDUPLICATES ( input )
}
workflow test_picard_markduplicates_unsorted_bam {
def input = []
input = [ [ id:'test', single_end:false ], // meta map
file("${launchDir}/tests/data/bam/test.paired_end.name.sorted.bam", checkIfExists: true) ]
PICARD_MARKDUPLICATES ( input )
}