nf-core_modules/software/nanoplot/meta.yml

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name: nanoplot
description: Run NanoPlot on nanopore-sequenced reads
keywords:
- quality control
- qc
- fastq
- sequencing summary
- nanopore
tools:
- nanoplot:
description: |
NanoPlot is a tool for ploting long-read sequencing data and
alignment.
homepage: http://nanoplot.bioinf.be
documentation: https://github.com/wdecoster/NanoPlot
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- fastq:
type: file
description: |
List of input basecalled-FastQ files.
- summary_txt:
type: file
description: |
List of sequenicng_summary.txt files from running basecalling.
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- html:
type: file
description: NanoPlot report
pattern: "*{.html}"
- png:
type: file
description: Plots generated by NanoPlot
pattern: "*{.png}"
- txt:
type: file
description: Stats from NanoPlot
pattern: "*{.txt}"
- log:
type: file
description: log file of NanoPlot run
pattern: "*{.log}"
- version:
type: file
description: File containing software version
pattern: "*.{version.txt}"
authors:
- "@drpatelh"
- "@yuukiiwa"