| .. |
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adapterremoval
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new module: AdapterRemoval (#309)
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2021-03-22 17:16:04 +00:00 |
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allelecounter
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Add alleleCounter module (#313)
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2021-03-23 14:37:53 +01:00 |
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bandage/image
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remove params section from meta.yml (#282)
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2021-03-19 13:16:50 +01:00 |
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bcftools
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remove params section from meta.yml (#282)
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2021-03-19 13:16:50 +01:00 |
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bedtools
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remove params section from meta.yml (#282)
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2021-03-19 13:16:50 +01:00 |
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bismark
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bismark/report: allow missing input data (#400)
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2021-04-06 10:59:00 +01:00 |
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blast
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remove params section from meta.yml (#282)
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2021-03-19 13:16:50 +01:00 |
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bowtie
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Add default output dir for modules that create indices, updated (#336)
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2021-03-23 17:55:01 +00:00 |
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bowtie2
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Add default output dir for modules that create indices, updated (#336)
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2021-03-23 17:55:01 +00:00 |
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bwa
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Update test paths in bwa mappers (#387)
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2021-03-25 09:24:21 +00:00 |
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bwamem2
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Update test paths in bwa mappers (#387)
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2021-03-25 09:24:21 +00:00 |
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bwameth
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update bwameth container build to match conda version (#402)
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2021-04-06 10:45:14 +01:00 |
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cat/fastq
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remove params section from meta.yml (#282)
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2021-03-19 13:16:50 +01:00 |
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cnvkit
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cnvkit module (#173)
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2021-03-22 15:27:30 -07:00 |
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cutadapt
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remove params section from meta.yml (#282)
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2021-03-19 13:16:50 +01:00 |
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deeptools
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Remove def from module options definition in main (#270)
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2021-03-15 12:16:43 +00:00 |
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dsh
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remove params section from meta.yml (#282)
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2021-03-19 13:16:50 +01:00 |
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fastp
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remove params section from meta.yml (#282)
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2021-03-19 13:16:50 +01:00 |
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fastqc
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remove params section from meta.yml (#282)
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2021-03-19 13:16:50 +01:00 |
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fasttree
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adding fasttree module (#412)
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2021-04-08 18:15:23 +01:00 |
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fgbio
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New modules: Fgbio callmolecularconsensusreads and sortbam (#352)
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2021-03-28 20:38:50 +01:00 |
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flash
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Re-organise all test data (#354)
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2021-03-24 09:53:41 +00:00 |
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gatk4
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gatk4 markduplicates (#356)
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2021-03-26 23:25:40 +00:00 |
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gffread
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Fix nf-core modules lint tests (#275)
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2021-03-16 17:16:47 +00:00 |
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gubbins
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new module: gubbins (#377)
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2021-04-07 16:31:24 +01:00 |
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gunzip
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remove params section from meta.yml (#282)
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2021-03-19 13:16:50 +01:00 |
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hisat2
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Add tests for hisat2 (#366)
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2021-03-25 21:08:46 +00:00 |
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homer/annotatepeaks
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Homer (#330)
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2021-03-23 11:24:54 -07:00 |
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ivar
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remove params section from meta.yml (#282)
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2021-03-19 13:16:50 +01:00 |
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kallisto/index
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Add module kallisto/index (#357)
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2021-03-24 12:25:39 +00:00 |
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kraken2/run
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Add kraken2 run module (#266)
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2021-03-18 13:08:06 +00:00 |
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lib
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style(#77): Fix editorconfig errors
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2020-12-17 17:50:24 -06:00 |
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macs2/callpeak
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Remove def from module options definition in main (#270)
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2021-03-15 12:16:43 +00:00 |
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methyldackel
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MethylDackel: fix version scraping (#401)
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2021-04-06 10:59:33 +01:00 |
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minia
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remove params section from meta.yml (#282)
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2021-03-19 13:16:50 +01:00 |
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minimap2/align
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remove params section from meta.yml (#282)
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2021-03-19 13:16:50 +01:00 |
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mosdepth
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remove params section from meta.yml (#282)
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2021-03-19 13:16:50 +01:00 |
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msisensor
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Add module: nf-core hackathon #207 : new module: msisensor/msi (#343)
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2021-03-25 16:46:00 -04:00 |
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multiqc
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remove params section from meta.yml (#282)
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2021-03-19 13:16:50 +01:00 |
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nanoplot
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Nanoplot and sequencing_summary.txt for Nanopore test data (#364)
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2021-04-09 08:31:38 +01:00 |
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optitype
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Add in OptiType (configbuilder, type) module(s) (#301)
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2021-03-23 16:48:05 +01:00 |
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pangolin
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Version bumps and minor module updates (#406)
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2021-04-06 13:38:41 +01:00 |
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phantompeakqualtools
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Remove def from module options definition in main (#270)
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2021-03-15 12:16:43 +00:00 |
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picard
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add picard_collectwgsmetrics (#304)
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2021-03-22 17:05:59 +01:00 |
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plasmidid
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Add plasmidid module (#410)
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2021-04-08 22:44:30 +01:00 |
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preseq/lcextrap
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Remove def from module options definition in main (#270)
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2021-03-15 12:16:43 +00:00 |
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prodigal
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Prodigal (#333)
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2021-03-23 11:03:58 -07:00 |
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prokka
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Add process label to prokka (#350)
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2021-03-24 04:54:52 +00:00 |
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qualimap
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remove params section from meta.yml (#282)
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2021-03-19 13:16:50 +01:00 |
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quast
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remove params section from meta.yml (#282)
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2021-03-19 13:16:50 +01:00 |
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rsem
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Version bumps and minor module updates (#406)
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2021-04-06 13:38:41 +01:00 |
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rseqc
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Remove def from module options definition in main (#270)
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2021-03-15 12:16:43 +00:00 |
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salmon
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Add default output dir for modules that create indices, updated (#336)
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2021-03-23 17:55:01 +00:00 |
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samtools
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modified the samtools/fastq module (#339)
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2021-03-23 17:43:52 +00:00 |
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seacr/callpeak
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remove params section from meta.yml (#282)
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2021-03-19 13:16:50 +01:00 |
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seqkit/split2
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remove params section from meta.yml (#282)
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2021-03-19 13:16:50 +01:00 |
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sequenzautils
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PR for sequenzautils/bam2seqz (#395)
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2021-04-01 07:08:27 +02:00 |
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seqwish/induce
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remove params section from meta.yml (#282)
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2021-03-19 13:16:50 +01:00 |
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shovill
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Update shovill module (#337)
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2021-03-24 04:57:41 +00:00 |
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snpsites
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New Snpsites module (#416)
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2021-04-09 08:00:33 +01:00 |
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sortmerna
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Remove def from module options definition in main (#270)
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2021-03-15 12:16:43 +00:00 |
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spades
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Version bumps and minor module updates (#406)
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2021-04-06 13:38:41 +01:00 |
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star
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Add default output dir for modules that create indices, updated (#336)
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2021-03-23 17:55:01 +00:00 |
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strelka/germline
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Re-organise all test data (#354)
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2021-03-24 09:53:41 +00:00 |
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stringtie
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Remove def from module options definition in main (#270)
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2021-03-15 12:16:43 +00:00 |
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subread/featurecounts
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Add tests for subread #106 (#393)
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2021-04-01 20:02:36 +01:00 |
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tabix
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Fix tabix/bgzip version command (#407)
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2021-04-07 08:39:53 +01:00 |
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tiddit/sv
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remove params section from meta.yml (#282)
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2021-03-19 13:16:50 +01:00 |
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trimgalore
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remove params section from meta.yml (#282)
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2021-03-19 13:16:50 +01:00 |
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ucsc
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ucsc_bed12tobigbed (previous pull request had conflicts) (#302)
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2021-03-24 04:55:49 +00:00 |
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umitools
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Remove def from module options definition in main (#270)
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2021-03-15 12:16:43 +00:00 |
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unicycler
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Adding unicycler module (#307)
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2021-03-22 18:14:24 +01:00 |
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untar
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remove params section from meta.yml (#282)
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2021-03-19 13:16:50 +01:00 |
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vcftools
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add vcftools module (#334)
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2021-03-24 04:54:23 +00:00 |
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yara
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Add YARA module (#353)
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2021-03-24 17:14:52 +01:00 |
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