nf-core_modules/software/graphmap2/align/meta.yml

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name: graphmap2_align
description: A versatile pairwise aligner for genomic and spliced nucleotide sequences
keywords:
- align
- fasta
- fastq
- genome
- reference
tools:
- graphmap2:
description: |
A versatile pairwise aligner for genomic and spliced nucleotide sequences.
homepage: https://github.com/lbcb-sci/graphmap2
documentation: https://github.com/lbcb-sci/graphmap2#graphmap2---a-highly-sensitive-and-accurate-mapper-for-long-error-prone-reads
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- fastq:
type: file
description: |
List of input FASTQ files
and paired-end data, respectively.
- fasta:
type: file
description: |
Reference database in FASTA format.
- index:
type: file
description: |
FASTA index in gmidx.
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- sam:
type: file
description: Alignment in SAM format
pattern: "*.sam"
- version:
type: file
description: File containing software version
pattern: "*.{version.txt}"
authors:
- "@yuukiiwa"
- "@drpatelh"