nf-core_modules/tests/software/bcftools/merge/main.nf

18 lines
820 B
Text
Raw Normal View History

2021-02-12 23:08:57 +00:00
#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
//keep --no-verson argument, otherwise md5 will change on each execution
include { BCFTOOLS_MERGE } from '../../../../software/bcftools/merge/main.nf' addParams( options: ['args': '--force-samples --no-version'] )
workflow test_bcftools_merge {
def input = []
input = [ [ id:'test' ], // meta map
[ file("${launchDir}/tests/data/genomics/sarscov2/vcf/test2.vcf.gz", checkIfExists: true),
file("${launchDir}/tests/data/genomics/sarscov2/vcf/test3.vcf.gz", checkIfExists: true) ],
[ file("${launchDir}/tests/data/genomics/sarscov2/vcf/test2.vcf.gz.tbi", checkIfExists: true),
file("${launchDir}/tests/data/genomics/sarscov2/vcf/test3.vcf.gz.tbi", checkIfExists: true) ]]
2021-02-12 23:08:57 +00:00
BCFTOOLS_MERGE ( input )
}