mirror of
https://github.com/MillironX/nf-core_modules.git
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a552d97849
* added sarscov2 vcf data; adjusted bcftools tests * updated README.md * deleted old VCF files; fixed mergevcfs * fixed tabix
17 lines
820 B
Text
17 lines
820 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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//keep --no-verson argument, otherwise md5 will change on each execution
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include { BCFTOOLS_MERGE } from '../../../../software/bcftools/merge/main.nf' addParams( options: ['args': '--force-samples --no-version'] )
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workflow test_bcftools_merge {
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def input = []
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input = [ [ id:'test' ], // meta map
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[ file("${launchDir}/tests/data/genomics/sarscov2/vcf/test2.vcf.gz", checkIfExists: true),
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file("${launchDir}/tests/data/genomics/sarscov2/vcf/test3.vcf.gz", checkIfExists: true) ],
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[ file("${launchDir}/tests/data/genomics/sarscov2/vcf/test2.vcf.gz.tbi", checkIfExists: true),
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file("${launchDir}/tests/data/genomics/sarscov2/vcf/test3.vcf.gz.tbi", checkIfExists: true) ]]
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BCFTOOLS_MERGE ( input )
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}
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