mirror of
https://github.com/MillironX/nf-core_modules.git
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106 lines
14 KiB
Text
106 lines
14 KiB
Text
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[2020-11-23 18:25:23,742] multiqc [DEBUG ] No MultiQC config found: /Users/eklavya/.pyenv/versions/miniconda3-latest/lib/python3.7/site-packages/multiqc_config.yaml
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[2020-11-23 18:25:23,742] multiqc [DEBUG ] No MultiQC config found: /Users/eklavya/.multiqc_config.yaml
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[2020-11-23 18:25:23,742] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml
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[2020-11-23 18:25:23,742] multiqc [DEBUG ] Command used: /Users/eklavya/.pyenv/versions/miniconda3-latest/bin/multiqc input/
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[2020-11-23 18:25:25,158] multiqc [WARNING] MultiQC Version v1.9 now available!
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[2020-11-23 18:25:25,158] multiqc [INFO ] This is MultiQC v1.8
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[2020-11-23 18:25:25,158] multiqc [DEBUG ] Command : /Users/eklavya/.pyenv/versions/miniconda3-latest/bin/multiqc input/
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[2020-11-23 18:25:25,158] multiqc [DEBUG ] Working dir : /Users/eklavya/projects/code/ORG_nf_core/modules/software/multiqc/test
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[2020-11-23 18:25:25,158] multiqc [INFO ] Template : default
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[2020-11-23 18:25:25,158] multiqc [DEBUG ] Running Python 3.7.3 (default, Mar 27 2019, 16:54:48) [Clang 4.0.1 (tags/RELEASE_401/final)]
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[2020-11-23 18:25:25,159] multiqc [INFO ] Searching : /Users/eklavya/projects/code/ORG_nf_core/modules/software/multiqc/test/input
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[2020-11-23 18:25:25,159] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, methylQA, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, trimmomatic, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, minionqc, mosdepth, clusterflow, bcl2fastq, interop, flash, seqyclean
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[2020-11-23 18:25:25,159] multiqc [DEBUG ] Using temporary directory for creating report: /var/folders/zp/63677vtx23d_b2_nd7mm92040000gn/T/tmph8bg8w5g
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[2020-11-23 18:25:25,251] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: test_1_fastqc.html
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[2020-11-23 18:25:25,251] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: test_2_fastqc.html
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[2020-11-23 18:25:25,624] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.1.1
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[2020-11-23 18:25:25,625] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.1.1
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[2020-11-23 18:25:25,626] multiqc [DEBUG ] No samples found: custom_content
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[2020-11-23 18:25:25,630] multiqc [DEBUG ] No samples found: conpair
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[2020-11-23 18:25:25,634] multiqc [DEBUG ] No samples found: peddy
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[2020-11-23 18:25:25,638] multiqc [DEBUG ] No samples found: methylQA
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[2020-11-23 18:25:25,642] multiqc [DEBUG ] No samples found: phantompeakqualtools
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[2020-11-23 18:25:25,647] multiqc [DEBUG ] No samples found: qualimap
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[2020-11-23 18:25:25,651] multiqc [DEBUG ] No samples found: preseq
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[2020-11-23 18:25:25,655] multiqc [DEBUG ] No samples found: quast
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[2020-11-23 18:25:25,659] multiqc [DEBUG ] No samples found: qorts
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[2020-11-23 18:25:25,663] multiqc [DEBUG ] No samples found: rna_seqc
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[2020-11-23 18:25:25,666] multiqc [DEBUG ] No samples found: rsem
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[2020-11-23 18:25:25,675] multiqc [DEBUG ] No samples found: rseqc
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[2020-11-23 18:25:25,679] multiqc [DEBUG ] No samples found: busco
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[2020-11-23 18:25:25,683] multiqc [DEBUG ] No samples found: goleft_indexcov
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[2020-11-23 18:25:25,687] multiqc [DEBUG ] No samples found: disambiguate
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[2020-11-23 18:25:25,691] multiqc [DEBUG ] No samples found: supernova
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[2020-11-23 18:25:25,700] multiqc [DEBUG ] No samples found: deeptools
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[2020-11-23 18:25:25,703] multiqc [DEBUG ] No samples found: sargasso
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[2020-11-23 18:25:25,707] multiqc [DEBUG ] No samples found: verifybamid
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[2020-11-23 18:25:25,711] multiqc [DEBUG ] No samples found: mirtrace
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[2020-11-23 18:25:25,715] multiqc [DEBUG ] No samples found: happy
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[2020-11-23 18:25:25,720] multiqc [DEBUG ] No samples found: homer
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[2020-11-23 18:25:25,723] multiqc [DEBUG ] No samples found: macs2
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[2020-11-23 18:25:25,727] multiqc [DEBUG ] No samples found: theta2
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[2020-11-23 18:25:25,731] multiqc [DEBUG ] No samples found: snpeff
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[2020-11-23 18:25:25,736] multiqc [DEBUG ] No samples found: gatk
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[2020-11-23 18:25:25,741] multiqc [DEBUG ] No samples found: htseq
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[2020-11-23 18:25:25,745] multiqc [DEBUG ] No samples found: bcftools
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[2020-11-23 18:25:25,750] multiqc [DEBUG ] No samples found: featureCounts
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[2020-11-23 18:25:25,754] multiqc [DEBUG ] No samples found: fgbio
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[2020-11-23 18:25:25,758] multiqc [DEBUG ] No samples found: dedup
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[2020-11-23 18:25:25,762] multiqc [DEBUG ] No samples found: damageprofiler
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[2020-11-23 18:25:25,774] multiqc [DEBUG ] No samples found: biobambam2
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[2020-11-23 18:25:25,778] multiqc [DEBUG ] No samples found: mtnucratio
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[2020-11-23 18:25:25,781] multiqc [DEBUG ] No samples found: picard
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[2020-11-23 18:25:25,785] multiqc [DEBUG ] No samples found: prokka
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[2020-11-23 18:25:25,789] multiqc [DEBUG ] No samples found: samblaster
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[2020-11-23 18:25:25,795] multiqc [DEBUG ] No samples found: samtools
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[2020-11-23 18:25:25,799] multiqc [DEBUG ] No samples found: sexdeterrmine
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[2020-11-23 18:25:25,803] multiqc [DEBUG ] No samples found: bamtools
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[2020-11-23 18:25:25,806] multiqc [DEBUG ] No samples found: jellyfish
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[2020-11-23 18:25:25,812] multiqc [DEBUG ] No samples found: vcftools
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[2020-11-23 18:25:25,816] multiqc [DEBUG ] No samples found: longranger
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[2020-11-23 18:25:25,820] multiqc [DEBUG ] No samples found: stacks
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[2020-11-23 18:25:25,830] multiqc [DEBUG ] No samples found: bbmap
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[2020-11-23 18:25:25,834] multiqc [DEBUG ] No samples found: bismark
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[2020-11-23 18:25:25,838] multiqc [DEBUG ] No samples found: biscuit
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[2020-11-23 18:25:25,842] multiqc [DEBUG ] No samples found: hicexplorer
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[2020-11-23 18:25:25,846] multiqc [DEBUG ] No samples found: hicup
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[2020-11-23 18:25:25,850] multiqc [DEBUG ] No samples found: hicpro
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[2020-11-23 18:25:25,853] multiqc [DEBUG ] No samples found: salmon
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[2020-11-23 18:25:25,857] multiqc [DEBUG ] No samples found: kallisto
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[2020-11-23 18:25:25,861] multiqc [DEBUG ] No samples found: slamdunk
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[2020-11-23 18:25:25,865] multiqc [DEBUG ] No samples found: star
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[2020-11-23 18:25:25,868] multiqc [DEBUG ] No samples found: hisat2
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[2020-11-23 18:25:25,872] multiqc [DEBUG ] No samples found: tophat
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[2020-11-23 18:25:25,875] multiqc [DEBUG ] No samples found: bowtie2
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[2020-11-23 18:25:25,879] multiqc [DEBUG ] No samples found: bowtie1
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[2020-11-23 18:25:25,883] multiqc [DEBUG ] No samples found: kat
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[2020-11-23 18:25:25,886] multiqc [DEBUG ] No samples found: leehom
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[2020-11-23 18:25:25,890] multiqc [DEBUG ] No samples found: adapterRemoval
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[2020-11-23 18:25:25,893] multiqc [DEBUG ] No samples found: clipandmerge
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[2020-11-23 18:25:25,897] multiqc [DEBUG ] No samples found: cutadapt
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[2020-11-23 18:25:25,901] multiqc [DEBUG ] No samples found: flexbar
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[2020-11-23 18:25:25,904] multiqc [DEBUG ] No samples found: trimmomatic
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[2020-11-23 18:25:25,908] multiqc [DEBUG ] No samples found: skewer
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[2020-11-23 18:25:25,912] multiqc [DEBUG ] No samples found: sortmerna
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[2020-11-23 18:25:25,915] multiqc [DEBUG ] No samples found: biobloomtools
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[2020-11-23 18:25:25,919] multiqc [DEBUG ] No samples found: fastq_screen
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[2020-11-23 18:25:25,922] multiqc [DEBUG ] No samples found: afterqc
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[2020-11-23 18:25:25,926] multiqc [DEBUG ] No samples found: fastp
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[2020-11-23 18:25:25,947] multiqc.modules.fastqc.fastqc [INFO ] Found 2 reports
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[2020-11-23 18:25:26,023] multiqc [DEBUG ] No samples found: minionqc
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[2020-11-23 18:25:26,027] multiqc [DEBUG ] No samples found: mosdepth
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[2020-11-23 18:25:26,031] multiqc [DEBUG ] No samples found: clusterflow
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[2020-11-23 18:25:26,035] multiqc [DEBUG ] No samples found: bcl2fastq
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[2020-11-23 18:25:26,039] multiqc [DEBUG ] No samples found: interop
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[2020-11-23 18:25:26,043] multiqc [DEBUG ] No samples found: flash
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[2020-11-23 18:25:26,046] multiqc [DEBUG ] No samples found: seqyclean
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[2020-11-23 18:25:26,050] multiqc [INFO ] Compressing plot data
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[2020-11-23 18:25:26,086] multiqc [INFO ] Report : multiqc_report.html
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[2020-11-23 18:25:26,086] multiqc [INFO ] Data : multiqc_data
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[2020-11-23 18:25:26,087] multiqc [DEBUG ] Moving data file from '/var/folders/zp/63677vtx23d_b2_nd7mm92040000gn/T/tmph8bg8w5g/multiqc_data/multiqc_fastqc.txt' to '/Users/eklavya/projects/code/ORG_nf_core/modules/software/multiqc/test/multiqc_data'
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[2020-11-23 18:25:26,087] multiqc [DEBUG ] Moving data file from '/var/folders/zp/63677vtx23d_b2_nd7mm92040000gn/T/tmph8bg8w5g/multiqc_data/multiqc_qualimap_bamqc_genome_results.txt' to '/Users/eklavya/projects/code/ORG_nf_core/modules/software/multiqc/test/multiqc_data'
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[2020-11-23 18:25:26,087] multiqc [DEBUG ] Moving data file from '/var/folders/zp/63677vtx23d_b2_nd7mm92040000gn/T/tmph8bg8w5g/multiqc_data/multiqc_general_stats.txt' to '/Users/eklavya/projects/code/ORG_nf_core/modules/software/multiqc/test/multiqc_data'
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[2020-11-23 18:25:26,087] multiqc [DEBUG ] Moving data file from '/var/folders/zp/63677vtx23d_b2_nd7mm92040000gn/T/tmph8bg8w5g/multiqc_data/multiqc_sources.txt' to '/Users/eklavya/projects/code/ORG_nf_core/modules/software/multiqc/test/multiqc_data'
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[2020-11-23 18:25:26,088] multiqc [DEBUG ] Moving data file from '/var/folders/zp/63677vtx23d_b2_nd7mm92040000gn/T/tmph8bg8w5g/multiqc_data/multiqc_data.json' to '/Users/eklavya/projects/code/ORG_nf_core/modules/software/multiqc/test/multiqc_data'
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[2020-11-23 18:25:26,231] multiqc [INFO ] MultiQC complete
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