2021-01-29 10:03:54 +00:00
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name: pangolin
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description: Phylogenetic Assignment of Named Global Outbreak LINeages
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keywords:
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2021-02-09 23:26:45 +00:00
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- covid
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- pangolin
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- lineage
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2021-01-29 10:03:54 +00:00
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tools:
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2021-02-09 23:26:45 +00:00
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- star:
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description: |
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Phylogenetic Assignment of Named Global Outbreak LINeages
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homepage: https://github.com/cov-lineages/pangolin#pangolearn-description
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manual: https://github.com/cov-lineages/pangolin#pangolearn-description
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2021-01-29 10:03:54 +00:00
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input:
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2021-02-09 23:26:45 +00:00
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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- fasta:
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type: file
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description: |
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The genome assembly to be evaluated
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2021-01-29 10:03:54 +00:00
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output:
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2021-02-09 23:26:45 +00:00
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- report:
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type: file
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description: Pangolin lineage report
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pattern: "*.{csv}"
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2021-10-03 07:20:26 +00:00
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- versions:
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2021-02-09 23:26:45 +00:00
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type: file
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2021-10-03 07:20:26 +00:00
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description: File containing software versions
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2021-09-27 08:41:24 +00:00
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pattern: "versions.yml"
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2021-01-29 10:03:54 +00:00
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authors:
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2021-02-09 23:26:45 +00:00
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- "@kevinmenden"
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- "@drpatelh"
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