nf-core_modules/modules/pbbam/pbmerge/meta.yml

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name: pbbam_pbmerge
description: The pbbam software package provides components to create, query, & edit PacBio BAM files and associated indices. These components include a core C++ library, bindings for additional languages, and command-line utilities.
keywords:
- pbbam
- pbbam/pbmerge
tools:
- pbbam:
description: PacBio BAM C++ library
homepage: https://github.com/PacificBiosciences/pbbioconda
documentation: https://pbbam.readthedocs.io/en/latest/tools/pbmerge.html
tool_dev_url: https://github.com/pacificbiosciences/pbbam/
doi: ""
licence: ['BSD-3-clause-Clear']
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- bam:
type: file
description: BAM files to merge
pattern: "*.bam"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- bam:
type: file
description: The merged bam file
pattern: "*.bam"
- pbi:
type: file
description: BAM Pacbio index file
pattern: "*.bam.pbi"
authors:
- "@sguizard"