2021-01-12 15:13:37 +00:00
|
|
|
- name: Run stringtie forward strand test workflow
|
|
|
|
|
command: nextflow run ./tests/software/stringtie/ -profile docker -entry test_stringtie_forward -c tests/config/nextflow.config
|
|
|
|
|
tags:
|
|
|
|
|
- stringtie
|
|
|
|
|
files:
|
2021-01-12 15:29:31 +00:00
|
|
|
- path: output/test_stringtie_forward/test.gene_abundance.txt
|
|
|
|
|
md5sum: cea2e346f4e8137da13265b9b0a4c573
|
|
|
|
|
- path: output/test_stringtie_forward/test.transcripts.gtf
|
2021-01-12 15:13:37 +00:00
|
|
|
md5sum: f1b5baa8d94f86e499556a4ec419a75a
|
2021-01-12 15:29:31 +00:00
|
|
|
- path: output/test_stringtie_forward/test.coverage.gtf
|
2021-01-12 15:13:37 +00:00
|
|
|
md5sum: d41d8cd98f00b204e9800998ecf8427e
|
2021-01-12 15:29:31 +00:00
|
|
|
- path: output/test_stringtie_forward/test.ballgown/e_data.ctab
|
|
|
|
|
md5sum: 48d5ddf52a3d203d9f85aded9600edb9
|
|
|
|
|
- path: output/test_stringtie_forward/test.ballgown/e2t.ctab
|
|
|
|
|
md5sum: f828838a28ae74dbc21cd5fc75b6d068
|
|
|
|
|
- path: output/test_stringtie_forward/test.ballgown/i_data.ctab
|
|
|
|
|
md5sum: 4651c095a12836aa3f7bc4d97ae7b877
|
|
|
|
|
- path: output/test_stringtie_forward/test.ballgown/i2t.ctab
|
|
|
|
|
md5sum: 6d598e0e28ef911d50783cd382e80ae6
|
|
|
|
|
- path: output/test_stringtie_forward/test.ballgown/t_data.ctab
|
|
|
|
|
md5sum: 0106f70121a8b520d98b8739aed92915
|
2021-01-12 15:13:37 +00:00
|
|
|
|
|
|
|
|
- name: Run stringtie reverse strand test workflow
|
|
|
|
|
command: nextflow run ./tests/software/stringtie/ -profile docker -entry test_stringtie_reverse -c tests/config/nextflow.config
|
|
|
|
|
tags:
|
|
|
|
|
- stringtie
|
|
|
|
|
files:
|
2021-01-12 15:29:31 +00:00
|
|
|
- path: output/test_stringtie_reverse/test.gene_abundance.txt
|
|
|
|
|
md5sum: cea2e346f4e8137da13265b9b0a4c573
|
|
|
|
|
- path: output/test_stringtie_reverse/test.transcripts.gtf
|
2021-01-12 15:13:37 +00:00
|
|
|
md5sum: cb0367e5f98f19fcc2043d248deb513c
|
2021-01-12 15:29:31 +00:00
|
|
|
- path: output/test_stringtie_reverse/test.coverage.gtf
|
2021-01-12 15:13:37 +00:00
|
|
|
md5sum: d41d8cd98f00b204e9800998ecf8427e
|
2021-01-12 15:29:31 +00:00
|
|
|
- path: output/test_stringtie_reverse/test.ballgown/e_data.ctab
|
|
|
|
|
md5sum: 48d5ddf52a3d203d9f85aded9600edb9
|
|
|
|
|
- path: output/test_stringtie_reverse/test.ballgown/e2t.ctab
|
|
|
|
|
md5sum: f828838a28ae74dbc21cd5fc75b6d068
|
|
|
|
|
- path: output/test_stringtie_reverse/test.ballgown/i_data.ctab
|
|
|
|
|
md5sum: 4651c095a12836aa3f7bc4d97ae7b877
|
|
|
|
|
- path: output/test_stringtie_reverse/test.ballgown/i2t.ctab
|
|
|
|
|
md5sum: 6d598e0e28ef911d50783cd382e80ae6
|
|
|
|
|
- path: output/test_stringtie_reverse/test.ballgown/t_data.ctab
|
|
|
|
|
md5sum: 0106f70121a8b520d98b8739aed92915
|
