nf-core_modules/tests/software/trimgalore/test.yml

22 lines
840 B
YAML
Raw Normal View History

- name: trimgalore single-end
command: nextflow run ./tests/software/trimgalore/ -entry test_trimgalore_single_end -c tests/config/nextflow.config
tags:
- trimgalore
files:
# These can't be md5'd reliably
# TODO Test for includes
2021-02-03 17:02:52 +00:00
- path: output/trimgalore/test.fastq.gz_trimming_report.txt
- path: output/trimgalore/test_trimmed.fq.gz
- name: trimgalore paired-end
command: nextflow run ./tests/software/trimgalore/ -entry test_trimgalore_paired_end -c tests/config/nextflow.config
tags:
- trimgalore
files:
# These can't be md5'd reliably
# TODO Test for includes
2021-02-03 17:02:52 +00:00
- path: output/trimgalore/test_1.fastq.gz_trimming_report.txt
- path: output/trimgalore/test_1_val_1.fq.gz
- path: output/trimgalore/test_2.fastq.gz_trimming_report.txt
- path: output/trimgalore/test_2_val_2.fq.gz