nf-core_modules/tests/software/bcftools/isec/test.yml

- name: bcftools isec test_bcftools_isec
  command: nextflow run tests/software/bcftools/isec -entry test_bcftools_isec -c tests/config/nextflow.config
  tags:
    - bcftools
    - bcftools_isec
  files:
    - path: output/bcftools/test/0000.vcf.gz
      md5sum: fc178eb342a91dc0d1d568601ad8f8e2
    - path: output/bcftools/test/0001.vcf.gz.tbi
      md5sum: 36e11bf96ed0af4a92caa91a68612d64
    - path: output/bcftools/test/sites.txt
      md5sum: 1cea3fbde7f6d3c97f3d39036f9690df
    - path: output/bcftools/test/0000.vcf.gz.tbi
      md5sum: 36e11bf96ed0af4a92caa91a68612d64
    - path: output/bcftools/test/0001.vcf.gz
      md5sum: fc178eb342a91dc0d1d568601ad8f8e2
    - path: output/bcftools/test/README.txt
      md5sum: 10fc33b66522645600d44afbd41fb792
update test data paths (#373) * update test data paths * Update test md5sums * gatk test fixes & update variantfiltration main * few extra fixes after review * fix suspected format error * Update software/gatk4/variantfiltration/main.nf * Update software/gatk4/variantfiltration/main.nf * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-03-24 18:14:11 +00:00			`- name: bcftools isec test_bcftools_isec`
			`command: nextflow run tests/software/bcftools/isec -entry test_bcftools_isec -c tests/config/nextflow.config`
Rearranging tests to test each module separately 2021-02-08 14:16:51 +00:00			`tags:`
			`- bcftools`
			`- bcftools_isec`
			`files:`
			`- path: output/bcftools/test/0000.vcf.gz`
Exchange VCF data by sarscov2 data (#261) * added sarscov2 vcf data; adjusted bcftools tests * updated README.md * deleted old VCF files; fixed mergevcfs * fixed tabix 2021-03-09 09:04:08 +00:00			`md5sum: fc178eb342a91dc0d1d568601ad8f8e2`
update test data paths (#373) * update test data paths * Update test md5sums * gatk test fixes & update variantfiltration main * few extra fixes after review * fix suspected format error * Update software/gatk4/variantfiltration/main.nf * Update software/gatk4/variantfiltration/main.nf * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-03-24 18:14:11 +00:00			`- path: output/bcftools/test/0001.vcf.gz.tbi`
			`md5sum: 36e11bf96ed0af4a92caa91a68612d64`
			`- path: output/bcftools/test/sites.txt`
			`md5sum: 1cea3fbde7f6d3c97f3d39036f9690df`
Rearranging tests to test each module separately 2021-02-08 14:16:51 +00:00			`- path: output/bcftools/test/0000.vcf.gz.tbi`
Exchange VCF data by sarscov2 data (#261) * added sarscov2 vcf data; adjusted bcftools tests * updated README.md * deleted old VCF files; fixed mergevcfs * fixed tabix 2021-03-09 09:04:08 +00:00			`md5sum: 36e11bf96ed0af4a92caa91a68612d64`
Rearranging tests to test each module separately 2021-02-08 14:16:51 +00:00			`- path: output/bcftools/test/0001.vcf.gz`
Exchange VCF data by sarscov2 data (#261) * added sarscov2 vcf data; adjusted bcftools tests * updated README.md * deleted old VCF files; fixed mergevcfs * fixed tabix 2021-03-09 09:04:08 +00:00			`md5sum: fc178eb342a91dc0d1d568601ad8f8e2`
Rearranging tests to test each module separately 2021-02-08 14:16:51 +00:00			`- path: output/bcftools/test/README.txt`
Exchange VCF data by sarscov2 data (#261) * added sarscov2 vcf data; adjusted bcftools tests * updated README.md * deleted old VCF files; fixed mergevcfs * fixed tabix 2021-03-09 09:04:08 +00:00			`md5sum: 10fc33b66522645600d44afbd41fb792`