nf-core_modules/modules/mlst/meta.yml

name: mlst
description: Run Torsten Seemann's classic MLST on a genome assembly
keywords:
  - mlst
tools:
  - mlst:
      description: Scan contig files against PubMLST typing schemes
      homepage: None
      documentation: None
      tool_dev_url: None
      doi: ""
      licence: ["GPL v2"]

input:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - fasta:
      type: file
      description: Assembly fasta file
      pattern: "*.{fasta,fa,fna}"

output:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
  - tsv:
      type: file
      description: MLST calls in tsv format
      pattern: "*.{tsv}"

authors:
  - "@lskatz"
  - "@tseemann"