nf-core_modules/tests/modules/seqtk/rename/test.yml

- name: seqtk rename test_seqtk_rename
  command: nextflow run tests/modules/seqtk/rename -entry test_seqtk_rename -c tests/config/nextflow.config
  tags:
    - seqtk
    - seqtk/rename
  files:
    - path: output/seqtk/test.renamed.fasta.gz
      contains:
        - ">test1"

- name: seqtk rename test_seqtk_rename_fq
  command: nextflow run tests/modules/seqtk/rename -entry test_seqtk_rename_fq -c tests/config/nextflow.config
  tags:
    - seqtk
    - seqtk/rename
  files:
    - path: output/seqtk/test.renamed.fastq.gz
      contains:
        - "@test1"
        - "@test2"
        - "@test3"
Seqtk rename (#1304) * Added seqtk/rename module and tests code * Updated files and testing code for seqtk rename * Added meta map to seqtk/rename module def * updated prefix parameter usage * updated test.yml to remove local filepaths --> change to output * Added empty line to main.nf 2022-02-16 16:28:08 +00:00			`- name: seqtk rename test_seqtk_rename`
			`command: nextflow run tests/modules/seqtk/rename -entry test_seqtk_rename -c tests/config/nextflow.config`
			`tags:`
			`- seqtk`
			`- seqtk/rename`
			`files:`
			`- path: output/seqtk/test.renamed.fasta.gz`
Set process label to `process_single` for modules with no `task.cpus` usage (#2076) * Set process label to `process_single` for modules with no `task.cpus` usage * Fix tests of 'borked' modules * prettier * More modules are single-threaded and can use process_single * Adding process_single to hmmer/esl* modules * Fix failing tests * Prettier Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk> Co-authored-by: Daniel Lundin <erik.rikard.daniel@gmail.com> 2022-09-19 09:54:47 +00:00			`contains:`
			`- ">test1"`
Seqtk rename (#1304) * Added seqtk/rename module and tests code * Updated files and testing code for seqtk rename * Added meta map to seqtk/rename module def * updated prefix parameter usage * updated test.yml to remove local filepaths --> change to output * Added empty line to main.nf 2022-02-16 16:28:08 +00:00
			`- name: seqtk rename test_seqtk_rename_fq`
			`command: nextflow run tests/modules/seqtk/rename -entry test_seqtk_rename_fq -c tests/config/nextflow.config`
			`tags:`
			`- seqtk`
			`- seqtk/rename`
			`files:`
			`- path: output/seqtk/test.renamed.fastq.gz`
Set process label to `process_single` for modules with no `task.cpus` usage (#2076) * Set process label to `process_single` for modules with no `task.cpus` usage * Fix tests of 'borked' modules * prettier * More modules are single-threaded and can use process_single * Adding process_single to hmmer/esl* modules * Fix failing tests * Prettier Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk> Co-authored-by: Daniel Lundin <erik.rikard.daniel@gmail.com> 2022-09-19 09:54:47 +00:00			`contains:`
			`- "@test1"`
			`- "@test2"`
			`- "@test3"`