nf-core_modules/tests/modules/biobambam/bammerge/nextflow.config

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process {
publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
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withName: BIOBAMBAM_BAMMERGE {
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ext.args = {[
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"md5=1",
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"md5filename=${meta.id}.md5",
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"index=1",
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"indexfilename=${meta.id}.bam.bai"
].join(" ").trim()}
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}
}