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fix config

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This commit is contained in:
Matthias De Smet 2022-05-17 09:01:02 +02:00
parent d3ddc2221a
commit 743e95c61b
1 changed files with 6 additions and 1 deletions
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7
tests/modules/biobambam/bammerge/nextflow.config
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@ -2,7 +2,12 @@ process {
publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
withName: BIOBAMBAM_BAMMERGE {
ext.args = "md5=1 md5filename=test.md5 index=1 indexfilename=test.bam.bai"
ext.args = [
"md5=1",
{"md5filename=${meta.id}.md5"},
"index=1",
{"indexfilename=${meta.id}.bam.bai"}
].join(" ").trim()
}
}