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nf-core_modules/tests/modules/bcftools/stats/test.yml

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update test data paths (#373) * update test data paths * Update test md5sums * gatk test fixes & update variantfiltration main * few extra fixes after review * fix suspected format error * Update software/gatk4/variantfiltration/main.nf * Update software/gatk4/variantfiltration/main.nf * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-03-24 18:14:11 +00:00
- name: bcftools stats test_bcftools_stats
Fix bcftools/stats module (#1953) * test verified commit bcftools * adjust tests * add suggestions * test for actual file content
2022-09-21 14:10:38 +00:00
command: nextflow run ./tests/modules/bcftools/stats -entry test_bcftools_stats -c ./tests/config/nextflow.config -c ./tests/modules/bcftools/stats/nextflow.config
Rearranging tests to test each module separately
2021-02-08 14:16:51 +00:00
tags:
Fix bcftools/stats module (#1953) * test verified commit bcftools * adjust tests * add suggestions * test for actual file content
2022-09-21 14:10:38 +00:00
- bcftools/stats
- bcftools
files:
- path: output/bcftools/test.bcftools_stats.txt
contains: ["TSTV 0 6 2 3.00 6 2 3.00", "DP 0 1 0 0.000000 5 55.555556"]
- name: bcftools stats test_bcftools_stats_regions
command: nextflow run ./tests/modules/bcftools/stats -entry test_bcftools_stats_regions -c ./tests/config/nextflow.config -c ./tests/modules/bcftools/stats/nextflow.config
tags:
- bcftools/stats
Rearranging tests to test each module separately
2021-02-08 14:16:51 +00:00
- bcftools
Fix bcftools/stats module (#1953) * test verified commit bcftools * adjust tests * add suggestions * test for actual file content
2022-09-21 14:10:38 +00:00
files:
- path: output/bcftools/test.bcftools_stats.txt
contains: ["TSTV 0 5 1 5.00 5 1 5.00", "DP 0 1 0 0.000000 3 42.857143"]
- name: bcftools stats test_bcftools_stats_targets
command: nextflow run ./tests/modules/bcftools/stats -entry test_bcftools_stats_targets -c ./tests/config/nextflow.config -c ./tests/modules/bcftools/stats/nextflow.config
tags:
Lint modules ci (#389) * ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-04-08 08:10:52 +00:00
- bcftools/stats
Fix bcftools/stats module (#1953) * test verified commit bcftools * adjust tests * add suggestions * test for actual file content
2022-09-21 14:10:38 +00:00
- bcftools
Rearranging tests to test each module separately
2021-02-08 14:16:51 +00:00
files:
- path: output/bcftools/test.bcftools_stats.txt
Fix bcftools/stats module (#1953) * test verified commit bcftools * adjust tests * add suggestions * test for actual file content
2022-09-21 14:10:38 +00:00
contains: ["TSTV 0 6 2 3.00 6 2 3.00", "DP 0 1 0 0.000000 5 55.555556"]
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