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16 lines
541 B
Text
16 lines
541 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { MUSCLE } from '../../../software/muscle/main.nf' addParams( options: ['args': '-fasta -verbose -phys -phyi -maxiters 2'])
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include { MUSCLE as MUSCLE_TREE } from '../../../software/muscle/main.nf' addParams( options: ['args': '-maketree'])
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workflow test_muscle {
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input = [ [ id:'test' ], // meta map
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file(params.test_data['sarscov2']['genome']['informative_sites_fas'], checkIfExists: true) ]
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MUSCLE ( input )
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MUSCLE_TREE ( MUSCLE.out.aligned_fasta )
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}
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