nf-core_modules/modules/bwa/index/meta.yml

name: bwa_index
description: Create BWA index for reference genome
keywords:
    - index
    - fasta
    - genome
    - reference
tools:
    - bwa:
        description: |
            BWA is a software package for mapping DNA sequences against
            a large reference genome, such as the human genome.
        homepage: http://bio-bwa.sourceforge.net/
        documentation: http://www.htslib.org/doc/samtools.html
        arxiv: arXiv:1303.3997
        licence: ['GPL-3.0-or-later']
input:
    - fasta:
        type: file
        description: Input genome fasta file
output:
    - index:
        type: file
        description: BWA genome index files
        pattern: "*.{amb,ann,bwt,pac,sa}"
    - versions:
        type: file
        description: File containing software versions
        pattern: "versions.yml"
authors:
    - "@drpatelh"
    - "@maxulysse"
Update bwa index docs 2020-08-07 11:38:01 +00:00			`name: bwa_index`
			`description: Create BWA index for reference genome`
Copy across test data and docs for bwa index 2020-08-05 16:27:28 +00:00			`keywords:`
Update indents and syntax 2020-08-07 14:05:25 +00:00			`- index`
			`- fasta`
			`- genome`
			`- reference`
Copy across test data and docs for bwa index 2020-08-05 16:27:28 +00:00			`tools:`
Update indents and syntax 2020-08-07 14:05:25 +00:00			`- bwa:`
			`description: \|`
			`BWA is a software package for mapping DNA sequences against`
			`a large reference genome, such as the human genome.`
			`homepage: http://bio-bwa.sourceforge.net/`
			`documentation: http://www.htslib.org/doc/samtools.html`
			`arxiv: arXiv:1303.3997`
Backfill software licenses meta (#876) * backfilled modules with meta.yml that had no license identifier * harmonized BSD license names * whitespace linting at modules/unzip/meta.yml:12 * harmonized software from US NIH-NCBI/NIST to 'US-Government-Work' * Update modules/bcftools/index/meta.yml `bcftools` is dual-licensed, use associative array to allow for multiple licenses Co-authored-by: Michael L Heuer <heuermh@acm.org> Co-authored-by: Michael L Heuer <heuermh@acm.org> 2021-10-22 22:39:54 +00:00			`licence: ['GPL-3.0-or-later']`
Copy across test data and docs for bwa index 2020-08-05 16:27:28 +00:00			`input:`
Update indents and syntax 2020-08-07 14:05:25 +00:00			`- fasta:`
			`type: file`
			`description: Input genome fasta file`
Copy across test data and docs for bwa index 2020-08-05 16:27:28 +00:00			`output:`
Update indents and syntax 2020-08-07 14:05:25 +00:00			`- index:`
			`type: file`
			`description: BWA genome index files`
			`pattern: "*.{amb,ann,bwt,pac,sa}"`
Update versions key in meta.yml for all modules (#787) 2021-10-03 07:20:26 +00:00			`- versions:`
Update indents and syntax 2020-08-07 14:05:25 +00:00			`type: file`
Update versions key in meta.yml for all modules (#787) 2021-10-03 07:20:26 +00:00			`description: File containing software versions`
Bulk update modules to use versions.yml (#739) * New functions.nf * Convert code to create versions.yml * Update meta.yml * update output channel * Fix more meta.yml * Manually update remaining modules * remove superflous echo * Fix misformatted meta.yml files * Fix yaml, was list instead of dict * fix version for bcftools Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-09-27 08:41:24 +00:00			`pattern: "versions.yml"`
Copy across test data and docs for bwa index 2020-08-05 16:27:28 +00:00			`authors:`
Update indents and syntax 2020-08-07 14:05:25 +00:00			`- "@drpatelh"`
			`- "@maxulysse"`